PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G163100.1
Common NamePHAVU_003G163100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 516aa    MW: 58832.2 Da    PI: 6.5116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G163100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-0786108326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C ff+  G+C+ Gd+C+F Hg
  Phvul.003G163100.1  86 MVPCYFFFN-GFCNKGDKCSFLHG 108
                         689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.549635IPR000571Zinc finger, CCCH-type
SMARTSM003560.002734IPR000571Zinc finger, CCCH-type
PfamPF156633.4E-11761No hitNo description
PROSITE profilePS501039.8453763IPR000571Zinc finger, CCCH-type
SMARTSM003560.973962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-683108IPR000571Zinc finger, CCCH-type
SMARTSM003560.001183109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.10383110IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-486108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-688111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDEDSLKRNT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWVSGE CLNPTCAFRH  60
PPLDGHTGVP APPEPTQNSL PANKTMVPCY FFFNGFCNKG DKCSFLHGSD DSIFTGKPVK  120
NDNGSTDVHN LENKSSGNGT GVASVPTHQS LTAPKHLSDF KLQPKEDHQL QLTKNVKQQG  180
DSLVISASEY KEAAVSGSDS PFPDDGFVHN MSHLRTEQGS EEQVNSQIEP EERWESSPHS  240
PGFDVLVHDE LENIGYEEDS EYLPVLDRNE QELNEQYLGH EFKDPIEYDT MCPEADILYP  300
QETYDGYRCF DRDLAHANGR TVRTYSRDIF LDSIFSRKRI RMSAEVAAYD SNLDLRDHLR  360
RRRENNGPPR RQESSSLMIR NQERHQRPGI EQRPSGRLTS QLGYSAIDSI GEVETLSIAN  420
KHGLFRRSQQ HRPRKHYREK PVRRPFLSSK ISRKPVSKQR GFIQESTTFS APKSLAEIKE  480
EKKKAEEGLH WKSTSTDFQD PKPLSEILKD KRTLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G163100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154984.10.0hypothetical protein PHAVU_003G163100g
TrEMBLV7CCA10.0V7CCA1_PHAVU; Uncharacterized protein
STRINGXP_007154984.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823