PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G157100.2
Common NamePHAVU_003G157100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 389aa    MW: 41406.2 Da    PI: 6.6751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G157100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12211256555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Phvul.003G157100.2 211 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 256
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.20E-13204260No hitNo description
SuperFamilySSF474594.32E-17204266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16208265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9211256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MQPCSGEMQG PNNNSLFNGN NNSSNNEQQI QFDAASNDDF LKQMLSNLPS SPWTLDPKPN  60
PNPLWDPNSD ETTPENNVLY PYDLQQANLA SKFRNHHITD DKASALMLQH HQLLLSSAAA  120
AAAAANSPLL QMPVSSLNDV VHAPSFKSPT PPLYNAFSAS LQGAAQPSNQ THHFQLPQQG  180
QSFGASAPAS GASGQPKQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD  240
KASMLDEIID YVKFLQLQVK VLSMSRLGGA AAVAPLVADI SSEGGGDCVQ PKSNNANGNS  300
NDTLATTEQQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISKATCHAR NPFINGDGPS  360
SPGMSALTLH SSTLSNGLVK DTASVSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G157100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-113AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154896.10.0hypothetical protein PHAVU_003G157100g
SwissprotQ9ZUG94e-87BH066_ARATH; Transcription factor bHLH66
TrEMBLV7CC850.0V7CC85_PHAVU; Uncharacterized protein
STRINGXP_007154897.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-68LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]