PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G157100.1

Common Name

PHAVU_003G157100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 397aa MW: 42179 Da PI: 6.5091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G157100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	219	264	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Phvul.003G157100.1 219 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 264 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	212	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-13	212	268	No hit	No description
PROSITE profile	PS50888	17.39	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	216	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	219	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MQPCSGEMQG PNNNSLFNGN NNSSNNEQQI QFDAASNDDF LKQMLSNLPS SPWTLDPKPN 60 PNPLWDPNSD ETTPENNVLY PYDLQQANLA SKFRNHHITD DKASALMLQH HQLLLSSAAA 120 AAAAANSPLL QMPVSSLNDV VHAPSFKSPT PNADASSVQP LYNAFSASLQ GAAQPSNQTH 180 HFQLPQQGQS FGASAPASGA SGQPKQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL 240 VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADISS EGGGDCVQPK 300 SNNANGNSND TLATTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI SKATCHARNP 360 FINGDGPSSP GMSALTLHSS TLSNGLVKDT ASVSKS*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MQPCSGEMQG PNNNSLFNGN NNSSNNEQQI QFDAASNDDF LKQMLSNLPS SPWTLDPKPN  60
PNPLWDPNSD ETTPENNVLY PYDLQQANLA SKFRNHHITD DKASALMLQH HQLLLSSAAA  120
AAAAANSPLL QMPVSSLNDV VHAPSFKSPT PNADASSVQP LYNAFSASLQ GAAQPSNQTH  180
HFQLPQQGQS FGASAPASGA SGQPKQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL  240
VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADISS EGGGDCVQPK  300
SNNANGNSND TLATTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI SKATCHARNP  360
FINGDGPSSP GMSALTLHSS TLSNGLVKDT ASVSKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G157100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-113	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007154897.1	0.0	hypothetical protein PHAVU_003G157100g
Swissprot	Q9ZUG9	6e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	V7CDB7	0.0	V7CDB7_PHAVU; Uncharacterized protein
STRING	XP_007154897.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-68	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Phvul.003G157100.1
Entrez Gene	18635041

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]