PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G124000.1
Common NamePHAVU_003G124000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 400aa    MW: 44013.8 Da    PI: 9.0233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G124000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.5e-27180237359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg+ WrKYGqK  kg+++pr+YYrC +   Cpv+k+v+r+a+d++v+++tYeg+Hnh+
  Phvul.003G124000.1 180 DGCLWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCATDESVMITTYEGNHNHS 237
                         9**************************98****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28171239IPR003657WRKY domain
PROSITE profilePS5081128.013173239IPR003657WRKY domain
SuperFamilySSF1182901.22E-24177239IPR003657WRKY domain
SMARTSM007742.2E-30178238IPR003657WRKY domain
PfamPF031066.5E-24180236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKDKVAFKNL LEVQKKASVS NTDALNWTQE PSITTTLGST LLGLRLNNFE LPQNLEQQPL  60
NQLGLLQIEL EEVKKENQNL RSMLNKITEH YAALQNQLLL AMRPKKLSSS PQNNEDMQKD  120
SRQDNVKKPG LPSWQFLHSG KMNKQVTQQE AKMIEEQAFE ASCKKARVSI RARSESLKGD  180
GCLWRKYGQK ISKGNPCPRA YYRCNMGTAC PVRKQVQRCA TDESVMITTY EGNHNHSLPQ  240
AARSMACTTS AALTMFLSGS TTSSHATTFS NHDLFSSLSA STHYPSASSS LTVTLDLTQP  300
PKNYPKFLTA TALSSSHSQT FPLSLNGYPQ QCEGLPLEKE LPLVDVLSAA ITRDPSLRAA  360
LEAAVSSLVG DSQNISNHGQ LSRSDYDPSS KMSAEASRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191772391677Probable WRKY transcription factor 4
2lex_A1e-191772391677Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G124000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-48AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154503.10.0hypothetical protein PHAVU_003G124000g
TrEMBLV7C8I10.0V7C8I1_PHAVU; Uncharacterized protein
STRINGXP_007154503.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-51WRKY family protein