PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G110400.1
Common NamePHAVU_003G110400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 163aa    MW: 17082.3 Da    PI: 9.882
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G110400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.7e-196295134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  Phvul.003G110400.1 62 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 95
                        ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-1356110IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6115692IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-135696No hitNo description
Gene3DG3DSA:3.30.50.108.1E-166096IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.25E-126196No hitNo description
PfamPF003206.9E-176296IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MLLPSLWCRQ IERCSRNPIE SQISEIGMVD PTEKGSEGED SNPNAPSSGN SPSSNNEQKK  60
TCADCGTTKT PLWRGGPAGP KSLCNACGIR SRKKKRAILG ISKGSNEDGR KGKRSGGAGA  120
AAIGGGALGR EVLLHRSHWK KLGEEEKAAV LLMSLSYGSV YA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G110400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928367e-92BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154340.11e-113hypothetical protein PHAVU_003G110400g
SwissprotQ9FJ103e-34GAT16_ARATH; GATA transcription factor 16
TrEMBLV7C8811e-112V7C881_PHAVU; Uncharacterized protein
STRINGXP_007154340.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-30GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]