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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G101300.1 | ||||||||
Common Name | PHAVU_003G101300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23399 Da PI: 8.498 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.4e-06 | 61 | 104 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + f +L++ +P + + + i +++ YIk+L+ Phvul.003G101300.1 61 IERERRSKMTQMFTQLQTSVPGlL-----PQATREVIINETIGYIKELE 104 8*********************55.....6788899*********9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.34 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-10 | 59 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-4 | 59 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 61 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.57E-6 | 61 | 108 | No hit | No description |
Pfam | PF00010 | 2.7E-4 | 61 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQGDTTEKET EETHSTMPPL SEIPPSSFLH PSTIAENTAN TTSRKRVKRI MGQTNCQSLN 60 IERERRSKMT QMFTQLQTSV PGLLPQATRE VIINETIGYI KELEKKKQRL EELKETMKGV 120 EESAVECGNS NRNCSIMVTV SANVAFFGIQ WVPRPGLVTQ ILKVFCNHQA DILAANVSVN 180 NGKLILAITA LVQNNGKCVV ENIKREIMGL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G101300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-136 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154231.1 | 1e-154 | hypothetical protein PHAVU_003G101300g | ||||
TrEMBL | V7CAD8 | 1e-152 | V7CAD8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154231.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14330 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G101300.1 |
Entrez Gene | 18634468 |