PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

TALE

Protein Properties

Length: 370aa MW: 41527.4 Da PI: 7.0183

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G081800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	298	332	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Phvul.003G081800.1 298 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 332 569*****************************885 PP
2	ELK	38.2	3.1e-13	252	272	1	21
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELK qLlrKY+gyLgsLkqEF Phvul.003G081800.1 252 ELKGQLLRKYRGYLGSLKQEF 272 9*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	8.0E-20	117	161	IPR005540	KNOX1
Pfam	PF03790	2.1E-22	118	157	IPR005540	KNOX1
SMART	SM01256	1.9E-25	166	217	IPR005541	KNOX2
Pfam	PF03791	1.2E-21	170	216	IPR005541	KNOX2
SMART	SM01188	5.9E-7	252	273	IPR005539	ELK domain
PROSITE profile	PS51213	11.139	252	272	IPR005539	ELK domain
Pfam	PF03789	5.7E-9	252	272	IPR005539	ELK domain
PROSITE profile	PS50071	13.07	272	335	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-19	274	350	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	274	339	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.7E-28	277	337	IPR009057	Homeodomain-like
CDD	cd00086	2.17E-12	284	336	No hit	No description
Pfam	PF05920	6.7E-17	292	331	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	310	333	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEGGSNEASS VMGFGENTSS SGVCPMMMMP LVTSHHGGHH PLNPNLNNPN RNPNVNTNTN 60 TLFLPMPTTT NNHHPNRNSI HDNNHNTNTS ELGYFMEIHS RNTNNNNDGS SSSSSSSAVK 120 AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVA RLEEACASAA VTMAGGTARI GEDPALDQFM 180 EAYCEMLIKY EQELTKPFKE AMLFLQRIEC QFKSLTISSS DTGCNEGGDR NGSSEDIDVH 240 NNIIDPQAED QELKGQLLRK YRGYLGSLKQ EFTKKRKKGK LPKEARQQLL DWWSRHYKWP 300 YPSESQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVVDPSHPH YYMENVVGNP 360 FPDLSHTML*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEGGSNEASS VMGFGENTSS SGVCPMMMMP LVTSHHGGHH PLNPNLNNPN RNPNVNTNTN  60
TLFLPMPTTT NNHHPNRNSI HDNNHNTNTS ELGYFMEIHS RNTNNNNDGS SSSSSSSAVK  120
AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVA RLEEACASAA VTMAGGTARI GEDPALDQFM  180
EAYCEMLIKY EQELTKPFKE AMLFLQRIEC QFKSLTISSS DTGCNEGGDR NGSSEDIDVH  240
NNIIDPQAED QELKGQLLRK YRGYLGSLKQ EFTKKRKKGK LPKEARQQLL DWWSRHYKWP  300
YPSESQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVVDPSHPH YYMENVVGNP  360
FPDLSHTML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	276	LKQEFTKKRK
2	273	277	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G081800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857339	0.0	DQ857339.1 Glycine max KNT1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007153990.1	0.0	hypothetical protein PHAVU_003G081800g
Swissprot	P46608	1e-167	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	V7C761	0.0	V7C761_PHAVU; Uncharacterized protein
STRING	XP_007153990.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-130	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Phvul.003G081800.1
Entrez Gene	18634265

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]