PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 36813.1 Da PI: 4.4893

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G070300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	81	134	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lg++ rqV +WFqNrRa+ k Phvul.003G070300.1 81 KKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134 56689***********************************************98 PP
2	HD-ZIP_I/II	129.4	1.4e-41	81	171	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk+ yd l+++ ++L +e+++L+ee+ Phvul.003G070300.1 81 KKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKAGYDILRRDYDNLVQENDKLKEEVY 171 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	70	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	76	136	IPR001356	Homeobox domain
SMART	SM00389	2.7E-17	78	140	IPR001356	Homeobox domain
CDD	cd00086	2.78E-16	79	137	No hit	No description
Pfam	PF00046	4.7E-16	81	134	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.7E-20	83	143	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	107	116	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	111	134	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	116	132	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-14	136	173	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MPGEMLNGGS SMTLLLQKER LPSSPDLIQT SWVQNSEPSF QGSKSLVNVV NVRNRPFFRG 60 VEKEENGDDE DFDVFPHQPG KKRRLTSEQV QFLESNFEVE NKLEPERKVQ LAKELGMQPR 120 QVAIWFQNRR ARFKTKQLEK DYGMLKAGYD ILRRDYDNLV QENDKLKEEV YSLMKVIPRE 180 KEEQNLDDTS CGAVNSEHKE EKDLIIYRGS ENGSKVALPV MVVSKQRDAN SAKSDVLDSE 240 SPHLTDGNQS SLFEPADSSH ALEPDHSNFS QEEEDILSQN ILTMPFLPMF EVEYVCYDEP 300 PENPCMFRFP VEDQTFCFW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	136	RRARFKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G070300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-178	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007153855.1	0.0	hypothetical protein PHAVU_003G070300g
TrEMBL	V7C6U5	0.0	V7C6U5_PHAVU; Uncharacterized protein
STRING	XP_007153855.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-43	homeobox 1

Link Out ? help Back to Top
Phytozome	Phvul.003G070300.1
Entrez Gene	18634141