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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.003G068800.1 |
| Common Name | PHAVU_003G068800g |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
Whirly |
| Protein Properties |
Length: 265aa MW: 29408.4 Da PI: 9.834 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.003G068800.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 195 | 1.1e-60 | 87 | 225 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91
s+yk+kaal++ ++ p+f+ ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l+++es effhdp++++s+eGkvr
Phvul.003G068800.1 87 SIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESFEFFHDPFKGKSDEGKVR 177
7****************************************************************************************** PP
Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
k lk+ePlpdGsG+++nlsv+n+lv+++e++++P++kae avl s ++
Phvul.003G068800.1 178 KILKLEPLPDGSGHLFNLSVQNKLVNVDENIYIPITKAELAVLTSTFN 225
*******************************************99885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MLNLQFQLHS QPSMLSSLSS LSSSSPKLFA NHSFSPKSLP FNPPKPFSLR CRHSDLFDQN 60
TLASSQRPTR PTASVAALPP RVYVGYSIYK GKAALTLTPR PPEFVPLDSG AYKISKEGYV 120
LLQFAPAVGT RQYDWNRKQV FSLSVGEMGS VISLGTRESF EFFHDPFKGK SDEGKVRKIL 180
KLEPLPDGSG HLFNLSVQNK LVNVDENIYI PITKAELAVL TSTFNFIMPY LLGWHTFANS 240
IKPEDTSGGN NANPRYGGDY EWNR*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-107 | 52 | 263 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-107 | 52 | 263 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-107 | 52 | 263 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-107 | 52 | 263 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 9e-77 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Carella P,Wilson DC,Cameron RK
Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
Front Plant Sci, 2014. 5: p. 775
[PMID:25620972] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Guan Z,Wang W,Yu X,Lin W,Miao Y
Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:30065159]
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