PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G068700.1
Common NamePHAVU_003G068700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 464aa    MW: 50990.2 Da    PI: 8.8368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G068700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31140199159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpvkk+v+r+aed +++++tYeg+Hnh+
  Phvul.003G068700.1 140 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpSCPVKKQVQRCAEDMSILITTYEGTHNHP 199
                         58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-32125201IPR003657WRKY domain
SuperFamilySSF1182901.01E-27134201IPR003657WRKY domain
PROSITE profilePS5081128.07135201IPR003657WRKY domain
SMARTSM007741.3E-37140200IPR003657WRKY domain
PfamPF031066.0E-27141199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MQDHKLEREM REVGEGNDNL KLSLVRDSTS DEESELVSLS LGISSTGKHE KNNRTEKIRE  60
NEDLKEGLSL GLDIRFDPSA IKNHSTESRC DGERKEEELR VIWPPSKVLK RTWDKSEASQ  120
HVEVKKARVC IRARCDTLTM NDGCQWRKYG QKMAKGNPCP RAYYRCTVSP SCPVKKQVQR  180
CAEDMSILIT TYEGTHNHPL PTSATTIAYT TSAAASMLQS PSLTTQLGLA NSDTVPLISS  240
SVPCNLNALN FTSSYHHLSK SPHLYFHTSS ISTSNSHPTV TLDLATPQTS PHIGKFTPSL  300
SFIPKYSSTN VDFSSSTFSP LQSSMLHSPC YGDYFNYGGL ITPNRNHNGS LMNTGKQPFL  360
GHLCQSNHIS NHTISKQPLP DSIVAATKAI TAAPKFQSAI LAAALTAYAG NGVRENHERH  420
RVQRMSFSAP SAPKRDSVIF QPSHASKSSF GSSSSKSNLF LDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22127201174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G068700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153834.10.0hypothetical protein PHAVU_003G068700g
TrEMBLV7C8Z30.0V7C8Z3_PHAVU; Uncharacterized protein
STRINGXP_007153834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-52WRKY DNA-binding protein 72