PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G062500.2
Common NamePHAVU_003G062500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 324aa    MW: 36627.6 Da    PI: 5.2913
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G062500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.3e-092663002155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yp+++++  LAk++gL+++q+ +WF N+R ++
  Phvul.003G062500.2 266 KWPYPTESDKIALAKSTGLDQKQINNWFINQRKRH 300
                         679*****************************885 PP
2ELK31.34.4e-11220241122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK+ LlrK+++++gsLk EFs
  Phvul.003G062500.2 220 ELKDKLLRKFGSHIGSLKLEFS 241
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-2482126IPR005540KNOX1
PfamPF037902.3E-2384125IPR005540KNOX1
SMARTSM012561.1E-26132183IPR005541KNOX2
PfamPF037914.5E-26136182IPR005541KNOX2
SMARTSM011884.3E-6220241IPR005539ELK domain
PROSITE profilePS512139.865220240IPR005539ELK domain
PfamPF037892.5E-8220241IPR005539ELK domain
PROSITE profilePS5007113.135240303IPR001356Homeobox domain
SuperFamilySSF466895.56E-20241314IPR009057Homeodomain-like
SMARTSM003892.6E-14242307IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-29245304IPR009057Homeodomain-like
CDDcd000862.34E-13252304No hitNo description
PfamPF059204.9E-17260299IPR008422Homeobox KN domain
PROSITE patternPS000270278301IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEDQMYGMPP TAEYSEKALM APENIFPAEY HGFLMSSAGR IPMFGSDELL SAAVAITAGL  60
RTEPYPSVAI APEIQRHHDT SSLIKAKIAS HPHYPRLLQA YIDCQKVGAP PEIACLLEEI  120
RRENDVCKRD VVYTCVGADP ELDEFMETYC DMLVKYKSDL TRPFDEATTF LNKIETQLTD  180
LCTGSSLPTL SDDGGVSSEE GLSAGDGDFQ DEQLHNEDRE LKDKLLRKFG SHIGSLKLEF  240
SKKKKRGKLP KDARQMLLQW WNIHYKWPYP TESDKIALAK STGLDQKQIN NWFINQRKRH  300
WKPSENMPFA MVDGLTGRFL TDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248KKKKRGKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G062500.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-126AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153755.10.0hypothetical protein PHAVU_003G062500g
RefseqXP_007153756.10.0hypothetical protein PHAVU_003G062500g
SwissprotQ84JS61e-145KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLV7C9080.0V7C908_PHAVU; Uncharacterized protein
STRINGXP_007153755.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-147KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]