PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G048100.1

Common Name

PHAVU_003G048100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 259aa MW: 28543.1 Da PI: 4.971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G048100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.6e-14	82	128	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+ +Er RR+++++ f+ L llP++ p K++Ka+i+ +Av+YIk L Phvul.003G048100.1 82 VHPSIERGRRKKMKDMFDDLSGLLPQL---P-SKVDKASIVNEAVNYIKVL 128 599*********************6...3.8*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	78	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.24E-14	81	133	No hit	No description
SuperFamily	SSF47459	7.46E-16	81	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-12	82	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-16	82	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-13	84	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.75E-5	185	244	No hit	No description
CDD	cd04873	0.00505	187	236	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.6E-5	188	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDFLLENLSG SSSSSNRSSE ITKNETLSNQ QQGETLVNKT SNQQQGEILM NKTPHQDIFE 60 ENEKKIVISE EGSYDLEIND EVHPSIERGR RKKMKDMFDD LSGLLPQLPS KVDKASIVNE 120 AVNYIKVLEE TLEKLERKKQ ERAEGGLKQI MGTTSGAVSV SGKQKVAFDK TWAASNMVLN 180 IQGNEAQFSI CSVHKPGLMT NIASVLEKHN IELISATISA NGNGSTCMIQ VHGKQGWDEN 240 SAEETYRKAA EEIMPLIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G048100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-118	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007153587.1	0.0	hypothetical protein PHAVU_003G048100g
TrEMBL	V7C9I9	0.0	V7C9I9_PHAVU; Uncharacterized protein
STRING	XP_007153587.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4773	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	5e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G048100.1
Entrez Gene	18633911