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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G039800.1 | ||||||||
Common Name | PHAVU_003G039800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | YABBY | ||||||||
Protein Properties | Length: 174aa MW: 18978.5 Da PI: 9.6084 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 152.2 | 4.8e-47 | 10 | 156 | 2 | 163 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 d++ se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + + + + +h +l + + sn +k +++ Phvul.003G039800.1 10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLSL--QGFYSNAKKGQAS 87 77899*************************************9866544444444444443...........3322..3333333332222 PP YABBY 93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 s+ ss +++++ +p++ v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f Phvul.003G039800.1 88 SS-SSSP--TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARF 156 22.2222..244555666666669**********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-56 | 14 | 156 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.41E-9 | 100 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.4E-5 | 109 | 155 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 4.28E-6 | 117 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MNHDDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP 60 PNSQNQSIDH TLSLQGFYSN AKKGQASSSS SSPTTSNESV SPKAASFVVK PPEKKHRLPS 120 AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARFIPNS PTSSVSASKV NTD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G039800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR011924 | 1e-177 | KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153487.1 | 1e-126 | hypothetical protein PHAVU_003G039800g | ||||
Swissprot | Q76EJ0 | 2e-66 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | V7C981 | 1e-125 | V7C981_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153487.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10259 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 3e-66 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G039800.1 |
Entrez Gene | 18633824 |