PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G039200.1
Common NamePHAVU_003G039200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27963.8 Da    PI: 8.3086
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G039200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g++KKA+E+SvLCdaeva+i+fs++gkl+ey++
  Phvul.003G039200.1  9 KRIENKINRQVTFSKRRGGLFKKANEISVLCDAEVALIVFSHKGKLFEYAT 59
                        79***********************************************86 PP
2K-box97.61.8e-32771743100
               K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         +++   ++++++ +++ e+++Lk++i+ Lqr+ R ++GedL s+slkeLq+LeqqL++s+k+iR+++n+l++e+i+elqkkek +qe+n  
  Phvul.003G039200.1  77 ERQLLGNDSETQGNWTIEYSRLKAKIDLLQRNYRPYMGEDLASMSLKELQSLEQQLDTSVKNIRTRRNDLIHESISELQKKEKWIQEQNSI 167
                         5566667788899****************************************************************************** PP

               K-box  94 Lrkklee 100
                         L +k++e
  Phvul.003G039200.1 168 LANKIKE 174
                         ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.62E-38279No hitNo description
SuperFamilySSF554552.49E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.64388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRSRVQLKR IENKINRQVT FSKRRGGLFK KANEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERH ERYAYAERQL LGNDSETQGN WTIEYSRLKA KIDLLQRNYR PYMGEDLASM  120
SLKELQSLEQ QLDTSVKNIR TRRNDLIHES ISELQKKEKW IQEQNSILAN KIKEKEEAVA  180
QHAVQWEQTN YKVDTSFLPQ QQPLPSLNIG GSSFNQEAAP EIGRNGLDLT LEPLFSCHLG  240
CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20174173MEF2 CHIMERA
6byy_B4e-20174173MEF2 CHIMERA
6byy_C4e-20174173MEF2 CHIMERA
6byy_D4e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G039200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953621e-179BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153481.10.0hypothetical protein PHAVU_003G039200g
SwissprotQ6E6S71e-116AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLV7C8741e-180V7C874_PHAVU; Uncharacterized protein
STRINGXP_007153481.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]