 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Phvul.003G035900.1 |
| Common Name | PHAVU_003G035900g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
LBD |
| Protein Properties |
Length: 220aa MW: 24001.7 Da PI: 8.303 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.003G035900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 93.8 | 1.9e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C++lr++C++dCv++p++ ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P G+vg+++++++
Phvul.003G035900.1 4 SCNGCRILRKGCTEDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQHHRTDVFKSLMYEACGRIMNPTFGSVGLFWSGEWA 94
6*********************9998777889*********************************************************** PP
DUF260 87 leqlkaelallkee 100
+q++++++l++++
Phvul.003G035900.1 95 QCQAAVDAVLAGSQ 108
*******9999887 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MKISCNGCRI LRKGCTEDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQH 60
HRTDVFKSLM YEACGRIMNP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMTTSHSQVM 120
VAHGSEHASK LLDIRHVVKD ANMDKVKGKS KKPNRTENVM MPMSHVGLVN SATLWNPILS 180
HEPRRLEGGG EEIVRAMLLS QDKPSINGGN NIDLELTLG*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 2e-77 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
