PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G028800.1
Common NamePHAVU_003G028800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 463aa    MW: 51489.3 Da    PI: 7.0911
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G028800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10176218345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAA++sR+RKka++++Le+   +L +  ++L
  Phvul.003G028800.1 176 DQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQEL 218
                         56889*************************8666665555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-8166221No hitNo description
SMARTSM003383.0E-6174243IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128176220IPR004827Basic-leucine zipper domain
PfamPF001709.4E-8177218IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-6178221No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141441.2E-26261335IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MKNMQGFKTA QPSSQLYCHS SFLLRGNDAN RNPTTGLCDL GDLHHSSAVF HQEDGVDLGS  60
SSMYSVKSNN VVGGSNMQYG TLSTNVGSSE IGSSGGGCMD TGLQLMYHKG VVMPTLPLGN  120
GHVDNWADSG IADNSQHTDD TSTDIDTDDR IQCNRVKNGS RMVMHSKDKT KVKPEDQKTL  180
RRLAQNREAA KKSRLRKKAY VQQLENSRVK LVQLEQELQQ ARQQGICIAA EGDQGRLAVG  240
NGALAFDMDY AHWVDEHQRL LNDLRLAINS QMSDDELHIL VEGVMEHYND LFRLKRIGAK  300
ADIFHILYGM WKSPVERRFM WLGGFRSSEL LKIIMNHLEP LTEQQLFGIC TLQKSSLQSE  360
DALNQGMEAL QQYLVETLSS TSLGPTGCGN VADYMGQMAL AMGKLGELEG LLHQADLLKQ  420
HTLQRLQQIL TTRQTARALL VQNDFISRLR ALSSLWLARP RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G028800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-108AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153359.10.0hypothetical protein PHAVU_003G028800g
SwissprotQ415581e-153HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLV7C7K10.0V7C7K1_PHAVU; Uncharacterized protein
STRINGXP_007153359.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-124bZIP family protein