PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G026800.2 | ||||||||
Common Name | PHAVU_003G026800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 40317.3 Da PI: 7.1618 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.7e-14 | 169 | 215 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Phvul.003G026800.2 169 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 215 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.136 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 169 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-15 | 170 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-15 | 170 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.61E-5 | 179 | 218 | No hit | No description |
CDD | cd04873 | 4.98E-6 | 253 | 330 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKKELDDQGQ SSSQPINNNN NNIQTYQEHL LFQEQMQQQQ QQQNTDIFGG SRGLMFPEIT 60 MQPWSMPPVH SFNPGPVHYN NNTNPVRDHH DQAFIVPPTP SPYSSFFSRR VPSLQFAYPS 120 SDHHHLRIIS DTLGPMVQPG SAAPFGLQAE LGKMTAQEIM EAKALAASKS HSEAERRRRE 180 RINNHLAKLR SLLPNTTKTD KASLLAEVIQ HVKELKRQTS HIAETSAVPT EADELTVDAA 240 NEDGKFVIKA SMCCEDRSDL LPDLIKTLKA LKLRTLKAEI TSVGGRVKNV LVIAGDEGTP 300 NTNEEQSMQQ QQQQRQYCIT SIQETLKAVM EKTAAGDESA SANVKRQRTN NINFLEQRSL 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 179 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G026800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153337.1 | 0.0 | hypothetical protein PHAVU_003G026800g | ||||
Refseq | XP_007153338.1 | 0.0 | hypothetical protein PHAVU_003G026800g | ||||
Swissprot | Q9S7Y1 | 1e-106 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | V7C584 | 0.0 | V7C584_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153337.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G026800.2 |
Entrez Gene | 18633690 |
Publications ? help Back to Top | |||
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