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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G008800.1 | ||||||||
Common Name | PHAVU_003G008800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SBP | ||||||||
Protein Properties | Length: 1010aa MW: 111882 Da PI: 8.1939 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.7e-40 | 88 | 165 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Phvul.003G008800.1 88 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 165 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-34 | 83 | 150 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 86 | 163 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 87 | 167 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.1E-30 | 89 | 162 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 8.39E-7 | 756 | 894 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-5 | 757 | 902 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.04E-4 | 803 | 893 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1010 aa Download sequence Send to blast |
MEKVAAPPIL MPRKRDLPYG VVAGSPGESW KWDWDSVRFA GKPPADDVVF EEESVAAAAA 60 PLQLNLAGRV GGNKRVRSGS PGAATYPMCQ VDNCREDLSK AKDYHRRHKV CEAHSKASKA 120 LLANQMQRFC QQCSRFHPLS EFDEGKRSCR RRLAGHNRRR RKTQPEDVTS ATPAPAAAAA 180 NLEIFNLLTA IAGASQGKFE ERRSQVPDRE QLVQILNRIP LPADLATKLL DAGNVNGKKD 240 HVQSQTPSSY HHHDQLNHTP AAPLTMDLLA VLSTTLSGSG PDANASPSQN RSCSSDGGSV 300 KSRSCADQTR QQHFFSVGGE RSSSSSQSPV EDSDCQEDVR VNLPLQLFSS SPEEDSLPKL 360 ASSRKYFSSD SSNPAEERSP SSSPPSPPVV EMQFDLQGGA RGLKPESISS GRGVNSNKET 420 SQSHSCNISL DLFKGSNNRI QQPSWLQSVP FQAGYTSSGS DHSPPSLNSD AQDHTGRIMF 480 KLFDRHPSHF PATLRAQIYS WLSNRPSDME SYIRPGCVVL SLYASMSSAA WEKLEENFLQ 540 HVHSLIQNSD SDFWRNGRFL VHSGSQLASH KDGKVRICKP WRTWKSPELI SVSPLAIVSG 600 QETSISLKGR NLSTPGTKIH CTGTGSYSSA EVIRSSYPGV MYDKIKLSGF KVQDVSPGVV 660 GRFFIEIENG FKGNSFPVII ADETICKELR SLESEFDEEE KMCDAISEDH EHHFGRPRSR 720 EEALHFLNEL GWLFQRERFS YVHEVPSYSL DRFKFILTFA VERNCCMLVK TLLDVLVDKH 780 MQGEWLSTGP VEMLNASQLL NRAVKRKYTG MVDLLIHYSI PNKNSTSRKY VFPPNLEGPA 840 GITPLHLAAC TSGSESVVDS LISDPQEIGL LCWDILVDAN GQTPHAYAMM RNNNSYNALA 900 DRKRAARRRP EISVTIEKEI AQSSLRLELQ QEQSNLVKRG QSSCAKCMTA EIRYNRRISG 960 SQAMLHRPFI YSMLAVAAVC VCVCVFFRGR PYVGSVARFS WETLDYGTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-32 | 79 | 162 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G008800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007153124.1 | 0.0 | hypothetical protein PHAVU_003G008800g | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | V7C6W9 | 0.0 | V7C6W9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007153124.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G008800.1 |
Entrez Gene | 18633505 |
Publications ? help Back to Top | |||
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