PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G332500.1
Common NamePHAVU_002G332500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 396aa    MW: 44165.4 Da    PI: 8.859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G332500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-065779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Phvul.002G332500.1 57 YVCEICNQGFQRDQNLQMHRRRH 79
                        9*********************9 PP
2zf-C2H214.78.9e-05134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k +  +s++k H++t+
  Phvul.002G332500.1 134 WVCERCSKGYAVQSDYKAHLKTC 156
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-55480No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASLVRIDSL VNNFSPSSQN APPTPTNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PLVKKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSS HKQWVCERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACNVGCLGPE TQPAVCLSQT ASSPSSENNF TTGVIIPNPI VTVVEPALFT NNDNKVNKLQ  240
PNLELQLSSA TPTAELQLSI GSLEISNTRE KSLGERVKDE AREQLRIAVA EKAYAEEARK  300
QATRQMELAE LEFTNAKRIR QQALEELDKA CALKDHAIKQ INSTMLQITC LACKHHFQSP  360
TITCAAPPDQ TSFVFSYITT DGGRLGKHRV KPINS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-18132184557Zinc finger protein JACKDAW
5b3h_F6e-18132184557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G332500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160566.10.0hypothetical protein PHAVU_002G332500g
SwissprotF4IPE31e-144IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLV7CTF40.0V7CTF4_PHAVU; Uncharacterized protein
STRINGXP_007160566.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-130C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]