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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G328700.2 |
Common Name | PHAVU_002G328700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 308aa MW: 34817.1 Da PI: 6.5842 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G328700.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 105.7 | 5.6e-33 | 63 | 203 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79
lp+G++F+P+d+e++ e+L++kv + ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++
Phvul.002G328700.2 63 LPAGVKFDPNDQEIL-EHLEAKVLCDVpklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtd 149
799***********9.99****9998856643322..22222333336**********.555666777******************74444 PP
NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l
Phvul.002G328700.2 150 eegsETRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
6555778************.9*************6658***************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MTWCNDSDEE RGIELLAPTL TPTTNNTLLT DTKPSENRTI TCPSCGHNIE FQDQTGINDL 60 PGLPAGVKFD PNDQEILEHL EAKVLCDVPK LHPLIDEFIP TLEGENGICY THPEKLPGVS 120 KDGQIRHFFH RPSKAYTTGT RKRRKVHTDE EGSETRWHKT GKTRPVFVGG AVKGFKKILV 180 LYTNYGRQKK PEKTNWVMHQ YHLGSNEEEK DGELVVSKVF YQTQPRQCGN SITKQDLYQS 240 VDDEDIIPRS GTLMEYYNPS FINYDHVGGR NNREASPQLI PNLVMQADTS SFIRLAMDAT 300 KARLDTK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 1e-147 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |