PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G322700.1
Common NamePHAVU_002G322700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 361aa    MW: 41209.4 Da    PI: 4.657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G322700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35151062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk y+++ed++++++i+ws+ g+sfv++++++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k++++          weF++++F +++k+
  Phvul.002G322700.1  15 FLKKCYDMVEDRSTDSVIRWSDAGDSFVISNTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDC---------WEFANENFVRNQKQ 96 
                         9***************************************************************9987.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  Phvul.002G322700.1  97 LLKNIRRRKH 106
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVKSNENGSA SVPPFLKKCY DMVEDRSTDS VIRWSDAGDS FVISNTTQFS VTLLPTYFKH  60
NNFSSFIRQL NIYGFRKIDT DCWEFANENF VRNQKQLLKN IRRRKHPHIA DQQKALPLND  120
NCDEPPQEAP DHGLWKEVEN LKSDKNSLTQ ELVKLRQHQE SAESNLLLLS DRLQGMEKHQ  180
QQMLSFLVMV VQSPGFLVQL LHPKENNWRL SESWNILDQD KQDDKPIASD GMIIKYKPPV  240
SEKLKPVVPL SPAFEKEPEL SADGLKDLCI SADFMKVLLD EKLCPLESHS PFLLPDLPDD  300
GSWEQLFLGS SFLGNIEDSS KESEGHTDSG MEIEPTISDI PDENSRAFES MVVEMERTRE  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25210416129Heat shock factor protein 1
5d5v_B3e-25210416129Heat shock factor protein 1
5d5v_D3e-25210416129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G322700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160444.10.0hypothetical protein PHAVU_002G322700g
TrEMBLV7CSU50.0V7CSU5_PHAVU; Uncharacterized protein
STRINGXP_007160444.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-89heat shock transcription factor A8