PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G311700.1
Common NamePHAVU_002G311700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 348aa    MW: 38092.6 Da    PI: 6.2534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G311700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000422112491255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Phvul.002G311700.1 211 RKEKLGDKITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                         6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.798199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-10209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-6209253No hitNo description
Gene3DG3DSA:4.10.280.101.6E-7213255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNRAVLQSSP VQQMMAANPN NWWNINTMRP PPPPPSQDSS PFFSTPSSFL TPHNPSSSLP  60
LPSWHDNNKE LPESWSQLLM SGMVSEEEKG AMCQVESKKL ENWEQQMLSQ ASRAAMVDVK  120
QEGSVNSYVY GHGNEEFHPP KPTWSQIVPA SSPKSCVTSF SSSMLDFSNN NTDARPPPLD  180
QSSECNSSAA GGAFKKARVQ PPTTQTTFKV RKEKLGDKIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSLPYL GTGSGNIRHQ QSVQGEKNCI FPEDPGQLLN ENCLKRKATS  300
EQQDSEEEAK KDLRSRGLCL VPVSCTLQVG SENGADYWAP AFGGGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G311700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160320.10.0hypothetical protein PHAVU_002G311700g
SwissprotQ8S3D11e-104BH068_ARATH; Transcription factor bHLH68
TrEMBLV7CQD20.0V7CQD2_PHAVU; Uncharacterized protein
STRINGXP_007160320.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]