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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G309500.1 | ||||||||
Common Name | PHAVU_002G309500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20718.8 Da PI: 10.0364 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.7 | 1.2e-21 | 11 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++n + vtfskRr+g++KKA+ELSvLC+aeva+++fs+ +k y y+ Phvul.002G309500.1 11 VKNPNTKLVTFSKRRTGLFKKANELSVLCGAEVAIVMFSPGQKPYSYA 58 56777889***********************************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.7E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.329 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGRRRIEIAE VKNPNTKLVT FSKRRTGLFK KANELSVLCG AEVAIVMFSP GQKPYSYAHP 60 SVDVVADKYL RRKRRSNVVG ANVRENNASN EVGERLCQEL SAVEVLTEEE HKKATELEMR 120 EKEQEASQFS QNKELLQSSP ALQRMVKDYV DAMEVSECML LLAKEAVIGV PNRPITKRRR 180 RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | DKYLRRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G309500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160294.1 | 1e-131 | hypothetical protein PHAVU_002G309500g | ||||
TrEMBL | V7CSF8 | 1e-130 | V7CSF8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160294.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 1e-29 | AGAMOUS-like 91 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G309500.1 |
Entrez Gene | 18639655 |