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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G309400.1 | ||||||||
Common Name | PHAVU_002G309400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20769.6 Da PI: 9.9769 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.8 | 1e-21 | 13 | 57 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y + Phvul.002G309400.1 13 DPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 57 56679*********************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.5E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-27 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.08E-32 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 7.6E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-25 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGRRKIEITE VKDPNTKQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNKPYSFGHP 60 SVDVVADKFL QQESASNVVV TPNVDEGSSS SNADNIDALN QQLCGVQTQI NDEHKKASEL 120 DRRKKQQDVT KLTHNKQLQR SYIRVQRKVE DYLDAIEVSE YMLLLAKEPV IGVTKQVTIK 180 RRRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-19 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6bz1_B | 8e-19 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6bz1_C | 8e-19 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6bz1_D | 8e-19 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G309400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160293.1 | 1e-134 | hypothetical protein PHAVU_002G309400g | ||||
TrEMBL | V7CQ10 | 1e-133 | V7CQ10_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160293.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 5e-34 | AGAMOUS-like 91 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G309400.1 |
Entrez Gene | 18639654 |