PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G283600.1 | ||||||||
Common Name | PHAVU_002G283600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26479.8 Da PI: 8.5446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.1 | 2.6e-47 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp ++ + +e yfFs+++ ky++g+r nr+tk gyWkatg+dk+ Phvul.002G283600.1 14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKHDPWDLPGNC--DPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKR 101 79****************************.89***************544..67899********************************* PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s+ + vg++ktL+fy+g++pkg++tdWv+heyrl Phvul.002G283600.1 102 ISSSsnaCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRL 141 **985555556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-55 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.941 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKHDPWDLP 60 GNCDPQERYF FSPKEAKYRN GNRMNRTTKC GYWKATGSDK RISSSSNACN GIVGIRKTLI 120 FYEGKSPKGS RTDWVLHEYR LVNAETGACN SSHNYVNEIG DWVLCRLSMK KRSIESGVDE 180 KQRVHNGPRL MFDFMMLGKT DSSTSSSCSS SNNIMEVSSN ASDHEETSGG YAYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-48 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 14 | 175 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 14 | 175 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 14 | 175 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G283600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-129 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159989.1 | 1e-177 | hypothetical protein PHAVU_002G283600g | ||||
Swissprot | Q9FY93 | 3e-70 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | V7CRJ9 | 1e-175 | V7CRJ9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159989.1 | 1e-176 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-71 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G283600.1 |
Entrez Gene | 18639390 |
Publications ? help Back to Top | |||
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