PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G283100.1
Common NamePHAVU_002G283100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 360aa    MW: 39965.6 Da    PI: 7.3814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G283100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-10189236455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Phvul.002G283100.1 189 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALVLDEIINYVQSLQ 236
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17183252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10183240No hitNo description
Gene3DG3DSA:4.10.280.108.6E-17185249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.961185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAFSSQYYH PFLVHSPTFS ITPSINKLSS LGDQQPLINT TTTLPPSHHF HNTLHQETSL  60
NSVTNQQSSS ADQTSKATTI SDTDPSVIKN HSPQTSMVVD KLEKGDEQVT QKVTPVQKKR  120
RARNEPSLSS SPLSMDSAEE AKKKQKNSNG GDQGEDKPKE VKKDQKKGPE DPPTGYIHVR  180
ARRGQATDSH SLAERVRREK ISERMKTLQR LVPGCDKVTG KALVLDEIIN YVQSLQNQVE  240
FLSMKLASVN PMFFDLAMDL DTLMKLNNAA SPSLLPCVEQ CRPNQALAFA DTTTLTTTTS  300
SFPTANNDDY LLDYSSSSFL QPHRPNAFFE YNGGQIWEVD QRQKFLHPYG FADNTGSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G283100.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0949011e-130BT094901.1 Soybean clone JCVI-FLGm-14F14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159982.10.0hypothetical protein PHAVU_002G283100g
TrEMBLV7CSS30.0V7CSS3_PHAVU; Uncharacterized protein
STRINGXP_007159982.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-52bHLH family protein