PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G281800.1
Common NamePHAVU_002G281800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 360aa    MW: 40517.7 Da    PI: 6.8965
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G281800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix673.8e-2144135184
            trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                         rWt+qe+l+Lie ++ +e+  +  +        +  p+We vs+++++rg++r+++qC+++w nl ++++kik++e++ ++es+s + + +
  Phvul.002G281800.1  44 RWTRQETLVLIESKKMVESGEQVCRfrsasgfiQSDPKWEMVSSFCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESGAKEESESFWIMRN 134
                         8*************9777665532233456888*********************************************9999988887776 PP

            trihelix  84 q 84 
                         +
  Phvul.002G281800.1 135 D 135
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-441111IPR009057Homeodomain-like
PfamPF138376.9E-1243132No hitNo description
PROSITE profilePS500906.59744109IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAEESSEKIC EGVSESPTTT PVGGQTPPEG DSKTRRIKAT RHPRWTRQET LVLIESKKMV  60
ESGEQVCRFR SASGFIQSDP KWEMVSSFCQ QRGVKRGAVQ CRKRWGNLLT DFRKIKKWES  120
GAKEESESFW IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLVK MVPKLENGFA  180
EVVGPEQCKE NEEEEEEDEA IVDSEKMSWS TQEENMETNV AANMSNGVLK VPPGFKEKGI  240
AGSLRKTPLL SLHTQEKEKQ QQQTPSCQGN YDPCFQTEPV FQHGYKRKLL SSDSSEDNTD  300
FNNSITKLLR RNSDILKTHL GAQNINYQLA RDQQKQQTDI LVAALGKLTD ALTKIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G281800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159959.10.0hypothetical protein PHAVU_002G281800g
TrEMBLV7CRG90.0V7CRG9_PHAVU; Uncharacterized protein
STRINGXP_007159959.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-50Trihelix family protein