PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G260700.1
Common NamePHAVU_002G260700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34493.1 Da    PI: 4.44
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G260700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1957110356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Phvul.002G260700.1  57 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 110
                         566899***********************************************9 PP
2HD-ZIP_I/II130.47.3e-4256148193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++e+L +e+
  Phvul.002G260700.1  56 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEI 146
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ke
  Phvul.002G260700.1 147 KE 148
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1938114IPR009057Homeodomain-like
PROSITE profilePS5007117.32952112IPR001356Homeobox domain
SMARTSM003898.6E-1855116IPR001356Homeobox domain
CDDcd000862.42E-1657113No hitNo description
PfamPF000464.4E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-2059119IPR009057Homeodomain-like
PRINTSPR000318.3E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000318.3E-692108IPR000047Helix-turn-helix motif
PfamPF021834.9E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRLGSSDSL GALMTICPPT DEHSPRNNHV YGREFQSMLE GLDDEGCVEE PGHHAEKKRR  60
LSVDQVKALE KNFEVENKLE PDRKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYDSLKL NYDTLQQDNE ALLKEIKELK SRLLLQEESN TESDVSVKEE MITLQDSNPL  180
CETAIPGSES KELSYECFNK SDEVLGFKDG SSDSDSSAIL NEENANNNDN SPNNATISSS  240
GAMQSQSFLS SSSPMNCFQF QKQFPTQYVK MEEHNFLSAD EACNFFSDEQ APTLQWYCSE  300
EWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G260700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026040.0AF402604.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159709.10.0hypothetical protein PHAVU_002G260700g
SwissprotP466683e-82ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLV7CQT80.0V7CQT8_PHAVU; Uncharacterized protein
STRINGXP_007159709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-79homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]