PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G248500.1 | ||||||||
Common Name | PHAVU_002G248500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 42213.6 Da PI: 8.3944 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.5 | 6.1e-08 | 244 | 290 | 17 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Phvul.002G248500.1 244 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 290 89***********************************9998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.2E-4 | 233 | 292 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.52E-16 | 235 | 283 | No hit | No description |
SuperFamily | SSF57959 | 6.19E-6 | 244 | 286 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-5 | 244 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MANSKGSSSF RNFMYPGKHA LLPPKSPFPS VSQAYADYVP NPAVGLKAGN RPREGNPHHQ 60 RTSSESLVIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYLDTANASN INYADQDEYK 120 YKNLMSIPSW SSQDFDRSKD ARHLPSYAEM NLAKQKNRSW DSFSNAMTNQ VGVSPGKESS 180 AFQSSGLPCT PHEADGLPPT ATEKHNSVDS GLQDGKLFSE KKDNSHAKPS ASETDTKRAK 240 QQFAQRSRVR KLQYIAELER NVQALQAEGS EVSAELEFLN QQNLILSMEN KALKQRLENI 300 AQEQLIKYLE QEVLEREIGR LRSLYQQQQQ PPMQPQQQPS SSHRRSNSRD LESQFANLSL 360 KHKDTNSGQD PALRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G248500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159569.1 | 0.0 | hypothetical protein PHAVU_002G248500g | ||||
Swissprot | Q8W3M7 | 6e-65 | Y4598_ARATH; Uncharacterized protein At4g06598 | ||||
TrEMBL | V7CQC2 | 0.0 | V7CQC2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159569.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5123 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 1e-114 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G248500.1 |
Entrez Gene | 18639029 |
Publications ? help Back to Top | |||
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