PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G246800.1
Common NamePHAVU_002G246800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93061.3 Da    PI: 6.4029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G246800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-192077457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le++++++++ps ++r++L +++    +++++q+kvWFqNrR +ek+
  Phvul.002G246800.1 20 YVRYTPEQVEALERVYAECPKPSSSRRQQLIRECpilsNIEQKQIKVWFQNRRCREKQ 77
                        6789****************************************************97 PP
2bZIP_1201.5e-06711131860
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                         rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l 
  Phvul.002G246800.1  71 RRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLV 113
                         9***************************************985 PP
3START163.71.4e-511673752205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +a+e+++++++ka+ ++ +Wv++  +++g++++ +++ s ++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l v+ +g  g+
  Phvul.002G246800.1 167 IAQETLAAFLSKATGTAINWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVVPTGngGT 256
                         678999******************************99999*****************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++lm+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+     ++vRae+lpSg+li+++++g+s +++v+h+dl+ +++
  Phvul.002G246800.1 257 IELMYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPTgppALNFVRAEVLPSGYLIRSCEGGGSIIHIVDHMDLDVWSV 347
                         ********************************************9999988899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+ + ++k ++++l++ ++
  Phvul.002G246800.1 348 PEVLRPLYESSKFLAQKLTTSALRHVRQ 375
                         **********************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.0E-161682IPR001356Homeobox domain
CDDcd000864.46E-171979No hitNo description
SuperFamilySSF466891.8E-161981IPR009057Homeodomain-like
PfamPF000461.0E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182177IPR009057Homeodomain-like
PROSITE profilePS5007115.4832278IPR001356Homeobox domain
CDDcd146862.38E-671110No hitNo description
PROSITE profilePS5084823.06157385IPR002913START domain
CDDcd088754.88E-66161377No hitNo description
SMARTSM002349.0E-48166376IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-21167352IPR023393START-like domain
PfamPF018527.5E-49167375IPR002913START domain
SuperFamilySSF559617.83E-36167378No hitNo description
PfamPF086702.3E-45702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MALCMQRDSV LNRLMDCGKY VRYTPEQVEA LERVYAECPK PSSSRRQQLI RECPILSNIE  60
QKQIKVWFQN RRCREKQRKE ASRLQTVNRK LSAMNKLLME ENDRLQKQVS QLVYDNGYMK  120
QQIHTASAST TDNSCESVVV SGQNQQQNPK TQHPQWDANN PAGLFAIAQE TLAAFLSKAT  180
GTAINWVQMI GMKPGPDSIG IVAVSPNCSG VAARACGLVS LEPTKVAEIL KDRPSWYRDC  240
RCLNVLSVVP TGNGGTIELM YMQTYAPTTL AAARDFWTLR YTTTLEDGSL VICERSLTSS  300
TGGPTGPPAL NFVRAEVLPS GYLIRSCEGG GSIIHIVDHM DLDVWSVPEV LRPLYESSKF  360
LAQKLTTSAL RHVRQIAQES SGEVHCGGGR QPAVLRTFSQ RLCKGFNDAV NGFVDDGWSL  420
IGNDGVEDVT IAINSSPNKF YGSHYNTSML PTLGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP SGFPSSQVIL PLAHTIEHEE FLEVVRIEGN  540
AFPPDDVALA CDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFCIIPLDP  600
KTDGPASTRT LDLASALDIG SGNARPAGES DLSNYNLRSV LTIAFQFTFE NHLRDNVAVM  660
ARQYVRNVVR SVQRVAMAIA PSRLSTTELG SKSLTSPPEA LTLARWICRS YRLHTCSDLF  720
RVESTSGDAI LKQLWHHSDA VLCCSVKTNA SPVFTFANQA GLDMLETTLV ALQDIMLDKV  780
LDESGRKVLC IEFSKIMEQG FAYLPAGICV SSMNRPVSYE QAIVCKVLDD HDSNHCLAFV  840
FMNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G246800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159548.10.0hypothetical protein PHAVU_002G246800g
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLV7CMV20.0V7CMV2_PHAVU; Uncharacterized protein
STRINGXP_007159548.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]