PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G230300.2
Common NamePHAVU_002G230300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 201aa    MW: 23635.5 Da    PI: 6.1731
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G230300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41119194277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv++C+adlseak+yhrrhkvCe h+k  +vl++gl+qrfCqqCsrfhelsefDe+krsCr+rL +hnerrrk++
  Phvul.002G230300.2 119 CQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVLMAGLQQRFCQQCSRFHELSEFDESKRSCRTRLVGHNERRRKNA 194
                         **************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-35112180IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.949116193IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37117196IPR004333Transcription factor, SBP-box
PfamPF031107.9E-33119192IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
METKRRPYVV LTNFSHILFT LLVFTIYIKY LWSSLPYVTP ESFFLTTFFW ISEEFMDASR  60
SEGKRVLRYN EEEEEDEEEE EEEEVETGFG EEGRRNKRVM TDLYGKKGSK AGGSMPPSCQ  120
VDNCDADLSE AKQYHRRHKV CEYHAKVHSV LMAGLQQRFC QQCSRFHELS EFDESKRSCR  180
TRLVGHNERR RKNAVDCRGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-36111192384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G230300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159345.11e-148hypothetical protein PHAVU_002G230300g
SwissprotQ387412e-47SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLV7CMH91e-147V7CMH9_PHAVU; Uncharacterized protein
STRINGXP_007159344.11e-120(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-39squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]