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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G228400.1 | ||||||||
Common Name | PHAVU_002G228400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HSF | ||||||||
Protein Properties | Length: 207aa MW: 23907.3 Da PI: 7.8245 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5e-34 | 36 | 130 | 2 | 102 |
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y++le e++++++sw+++g+sfvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g Phvul.002G228400.1 36 FLLKTYDLLEegeGEDITKIVSWNAEGTSFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKMSSKR---------WEFKHEKFQRG 117 9********955556999**************************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++l +i rkk Phvul.002G228400.1 118 CRQMLGEITRKKC 130 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.2E-35 | 28 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.2E-42 | 32 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.89E-29 | 33 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.0E-30 | 36 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-12 | 36 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-12 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-12 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVDKNVLELN LGLGHNNFGG DAHVGQSPRQ RCPPPFLLKT YDLLEEGEGE DITKIVSWNA 60 EGTSFVVWSP AEFSELTLPR YFKHNNFSSF IRQLNTYGFK KMSSKRWEFK HEKFQRGCRQ 120 MLGEITRKKC EPSVFPAYLK SSSEENASSS TEENNQQLLM EENKNLKKER LELQMQIDEC 180 KALEMKLLAC LSQFMDTHQT KLRKLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-17 | 34 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-17 | 34 | 128 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-17 | 34 | 128 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G228400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-154 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159323.1 | 1e-153 | hypothetical protein PHAVU_002G228400g | ||||
TrEMBL | V7CM98 | 1e-152 | V7CM98_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159323.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-36 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G228400.1 |
Entrez Gene | 18638826 |