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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G224900.1 |
Common Name | PHAVU_002G224900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 351aa MW: 38934.4 Da PI: 8.9402 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G224900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 173.2 | 7.9e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelvv+yLk+k+++++l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
Phvul.002G224900.1 15 LPPGFRFHPTDEELVVHYLKRKASSTPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKP 104
79****************************.88***************8888999************************************ PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+l++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
Phvul.002G224900.1 105 ILTSdGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
**9967788***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MDSTDSSSAS QHPHLPPGFR FHPTDEELVV HYLKRKASST PLPVAIIADV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPILTSDG HQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLVHDSFNST SKPPPLVPPN KKNSLRLDNW VLCRIYKKSN 180 SSILTRPPLM EQGEELSMEN MLPTMSTLSM ANNNTQNSKP QSSRGTSYGP LGLENDDNFF 240 DGILAVDHQS MQSGSDSHLF SPNSKGGNFP MKRALTSQQL WNETGSPGSS SSCKRFHGDL 300 NSGTEDNDSF VSLLSQFPQN ATFQPNAIHG SVGDGAQRQQ QFQLPGINWN *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-74 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-74 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |