PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G216700.1 | ||||||||
Common Name | PHAVU_002G216700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36999.3 Da PI: 7.6077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.7e-13 | 153 | 198 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + +K +Ka+iL A++Y+k+Lq Phvul.002G216700.1 153 HIIAERKRREKLSQRFIALSALVPGL-----QKTDKASILGDAINYLKQLQ 198 899**********************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.986 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.21E-14 | 153 | 202 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-18 | 153 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 153 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 153 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-15 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MEDPNFLRQW HLSSIDDPNL LPVAAAFGET FQHHAFTYPD FNPKASMETT LTDIERPTKH 60 HKNISWNPNK SAAQTSDTQF VSFPNLVSFM DSNHISPLGL VKANEMACPI TNSTTSLDTI 120 SQGILGNHNY LFKACQETKK IGRRSKIYQP PDHIIAERKR REKLSQRFIA LSALVPGLQK 180 TDKASILGDA INYLKQLQEK VKALEEERNM KKTVESVVIL KKPQLSNDGN TSSSEYDGPL 240 FDGTIPEIAA RFCERNVLIT VHCEKTKGVV EKTIHEIENL HLKVTNSNAM TFGRCAIDIT 300 IIAQMDMEFC MEVKDVVRNL RSAFTSFM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_B | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_E | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_F | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_G | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_I | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_M | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
5gnj_N | 5e-15 | 149 | 217 | 5 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 156 | 161 | ERKRRE |
2 | 157 | 162 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G216700.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159189.1 | 0.0 | hypothetical protein PHAVU_002G216700g | ||||
Swissprot | Q9T072 | 4e-52 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | V7CPC4 | 0.0 | V7CPC4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159189.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-54 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G216700.1 |
Entrez Gene | 18638701 |