PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G212400.1

Common Name

PHAVU_002G212400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

M-type_MADS

Protein Properties

Length: 97aa MW: 11142.9 Da PI: 10.8296

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G212400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.3	1.5e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl++y+s Phvul.002G212400.1 9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYAS 59 68***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.469	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-31	2	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-26	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.90E-36	3	78	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFDYASS 60 SMQQVIERLD RHSAMHRSDR SYMELQVSFS NINLLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-22	1	78	1	78	MEF2C
5f28_B	1e-22	1	78	1	78	MEF2C
5f28_C	1e-22	1	78	1	78	MEF2C
5f28_D	1e-22	1	78	1	78	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G212400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT099338	1e-100	BT099338.1 Soybean clone JCVI-FLGm-13P11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159143.1	2e-63	hypothetical protein PHAVU_002G212400g
Swissprot	Q9FUY6	2e-35	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	V7CLT9	4e-62	V7CLT9_PHAVU; Uncharacterized protein
STRING	XP_007159143.1	6e-63	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-34	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G212400.1
Entrez Gene	18638656

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]