PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G171600.1
Common NamePHAVU_002G171600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 402aa    MW: 44976.9 Da    PI: 8.1239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G171600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++
  Phvul.002G171600.1  15 MLPGFRFHPTDEELVGFYLKRKIQQSPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 104
                         579***************************.89***************8888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Phvul.002G171600.1 105 IYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                         ***956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5714174IPR003441NAC domain
PROSITE profilePS5100556.99215174IPR003441NAC domain
PfamPF023651.7E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEERNDNGEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQS PLSIELIKQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLTNPSS SPKKFMDKTI PANESWAICR IFKKTNATAQ  180
RALSHSWVSP LPETTTSDHM LGTDRYGNQF STANMLFPKK TSLASQFCTF NHNDTQHSTT  240
TTSTPCPIDI LSSYNKPIIN PLMLYKPLDL LPISNGDLST GLIFSCPLET STNSAKSSMD  300
VSSLLMSTST SVLGEFNSKT SEGLSTNFGG LQEHGYQIPL LREMQGSFGN HDDNVFIKIP  360
NVDVAHVGEQ QSETVRSTGF PISIGDAWKP NVLWDSSSLS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531718119171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531718119171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531718119171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531718119171NO APICAL MERISTEM PROTEIN
3swm_A2e-531718122174NAC domain-containing protein 19
3swm_B2e-531718122174NAC domain-containing protein 19
3swm_C2e-531718122174NAC domain-containing protein 19
3swm_D2e-531718122174NAC domain-containing protein 19
3swp_A2e-531718122174NAC domain-containing protein 19
3swp_B2e-531718122174NAC domain-containing protein 19
3swp_C2e-531718122174NAC domain-containing protein 19
3swp_D2e-531718122174NAC domain-containing protein 19
4dul_A1e-531718119171NAC domain-containing protein 19
4dul_B1e-531718119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G171600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158658.10.0hypothetical protein PHAVU_002G171600g
SwissprotQ9ZVH01e-115FEZ_ARATH; Protein FEZ
TrEMBLV7CKG40.0V7CKG4_PHAVU; Uncharacterized protein
STRINGXP_007158658.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-112NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]