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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G170200.1 |
Common Name | PHAVU_002G170200g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 257aa MW: 29410.4 Da PI: 8.2651 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G170200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.7 | 3.1e-55 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeel+v+yL++++++k++++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+
Phvul.002G170200.1 9 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKA 98
79****************************.89***************99999************************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++s +++lvg+kk+Lvfykgr pkg ktdW+mheyrl
Phvul.002G170200.1 99 IYS-GSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRL 134
***.9******************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MDATTPSELP PGFRFHPTDE ELIVYYLCNQ ATSKPCPASI IPEVDLYKFD PWELPDKTEF 60 GENEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGSKLVGVKK SLVFYKGRPP 120 KGDKTDWIMH EYRLAESKQP VNRKIGSMRL DDWVLCRIYK KKNTGKTLEH KETHPKVQMT 180 NLIAANNDEQ KMMNLPRTWS LTYLLDMNYL GPILSDGSYC STFDFQISNA NIGIDPFVNS 240 QPVEMANNYV SDSGKY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-73 | 2 | 166 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-73 | 2 | 166 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-73 | 2 | 166 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-73 | 2 | 166 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-73 | 2 | 166 | 13 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-73 | 2 | 166 | 10 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-73 | 2 | 166 | 10 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF402603 | 0.0 | AF402603.1 Phaseolus vulgaris NAC domain protein NAC2 mRNA, complete cds. |