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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G166700.1 |
Common Name | PHAVU_002G166700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
SRS |
Protein Properties |
Length: 321aa MW: 34755.1 Da PI: 6.6631 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G166700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 226.9 | 3.7e-70 | 108 | 259 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92
+sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrerqqql++++++ ++s + + +r+r++++ ++s+l++t+l+
Phvul.002G166700.1 108 GSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSTLQQNIESSGELPKRQRERDHNNPTSSSLACTRLP 198
57899*****************************************************999999999999999999999999********* PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
s+ s++ le ++P+ v+s+a frcvrvss+d+++ee+aY tav+igGhvfkGiLyd+G+e
Phvul.002G166700.1 199 SNPSSSGLEEVNFPAVVRSSAEFRCVRVSSMDEADEEYAYSTAVNIGGHVFKGILYDYGPE 259
***********************************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MAGIFSLGGR GNNNEEEIPP PPDTLYWYNN KNDDVSSYHH HRGGGGFELW NQQQQQHFMD 60 QGPPQPRPLF HQDLYSALGV GVGPSRPISD DQSSSRSGFM VGGGSGSGSG GISCQDCGNQ 120 AKKDCPHMRC RTCCKSRGFD CQTHVKSTWV PASRRRERQQ QLSTLQQNIE SSGELPKRQR 180 ERDHNNPTSS SLACTRLPSN PSSSGLEEVN FPAVVRSSAE FRCVRVSSMD EADEEYAYST 240 AVNIGGHVFK GILYDYGPEG NRNYMGGNGE SSSTGVGGLN LTTGAVVSEP LLDPSSSLYP 300 APLNTFMPGS GTQFFPHPRS *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015043 | 1e-165 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G66350.1 | 2e-77 | Lateral root primordium (LRP) protein-related |