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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G148900.1 | ||||||||
Common Name | PHAVU_002G148900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 237aa MW: 25519.5 Da PI: 6.9902 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.9 | 6.8e-25 | 45 | 91 | 11 | 58 |
ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 hA+ +Ggha+DGCgEfm++ g+eg+ +alkCaAC CHRnFHR+e++ Phvul.002G148900.1 45 NDHAVGIGGHALDGCGEFMAA-GTEGSLDALKCAACSCHRNFHRKESD 91 57******************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 21.637 | 40 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-18 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-22 | 45 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-22 | 45 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-32 | 160 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.45E-18 | 161 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.9E-26 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEFEDQEDQE EEQCMSAAAF DPTRMKLPLG PEAVMAAQPV RTSTNDHAVG IGGHALDGCG 60 EFMAAGTEGS LDALKCAACS CHRNFHRKES DGAGASVGGV DPFLVSHHHL HHPPPPQFAA 120 YYRTPTGYLQ VGGQARVTGT LALPSTSGGG GTQSTREDQE DVSNPSAGGT GSKKRFRTKF 180 TQEQKDKMLE LAEKLGWRIQ KHDEGVVQAF CNETGVKRHV LKVWMHNNKH TLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G148900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158386.1 | 1e-178 | hypothetical protein PHAVU_002G148900g | ||||
Swissprot | A2Z259 | 3e-70 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | V7CM97 | 1e-176 | V7CM97_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158386.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-62 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G148900.1 |
Entrez Gene | 18638006 |