PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G148000.1
Common NamePHAVU_002G148000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 222aa    MW: 24873 Da    PI: 10.8966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G148000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-1147104354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR riN  +e+Lr++lP++          ++  +Ka++L ++++ +k+L
  Phvul.002G148000.1  47 KKHSEAEKRRRMRINGQYETLRTILPNLIkhgeldCVMNQQKDKASVLAETIKQVKEL 104
                         68*************************9989999944555567777777777776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1237113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.06244104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-847109No hitNo description
PfamPF000103.6E-847104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1348115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-750110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQPFRSFYNS EAQMIRGGFP QPFISRTYKT SFLKKRSNAE IKVVAAKKHS EAEKRRRMRI  60
NGQYETLRTI LPNLIKHGEL DCVMNQQKDK ASVLAETIKQ VKELKRKVSK LEQDSCGNSS  120
KDVVKFPSGA DRLNLERCND EEGVVKATLS CEESLGLMSA ISRAVGSVKT KVVKAEIVSV  180
GGRNRSVLWV KGLGKDRMGM LKSSLKIAMH KPAFKMRRST H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G148000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-175AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158377.11e-163hypothetical protein PHAVU_002G148000g
TrEMBLV7CN801e-162V7CN80_PHAVU; Uncharacterized protein
STRINGXP_007158377.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-36bHLH family protein