PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G137000.1
Common NamePHAVU_002G137000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 792aa    MW: 87880.5 Da    PI: 5.9152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G137000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2084139156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Phvul.002G137000.1  84 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 139
                         688899***********************************************998 PP
2START153.42e-482855092206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         la + ++elvk+ + +ep+W +ss    e +n +e  ++f+  ++       ++ea+r++ vv+m++++lv  +ld   +W e ++    +
  Phvul.002G137000.1 285 LAASSMAELVKMCQTNEPLWIRSSegerEVLNFEEHARIFPWPQNlkhrseLRTEASRDTSVVIMNSVTLVDAFLDGQ-KWMELFPtivsR 374
                         78899*******************6666666667777777666669********************************.9*999999999* PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                         a+t++ issg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds  ++  ++s+ R  ++ Sg++i++++ng+
  Phvul.002G137000.1 375 AKTVQIISSGasghasGTLQLMSAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HPSYPRYCRRSSGCVIQDMPNGY 464
                         **************************************************************99999.9********************** PP

                         EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         s+vtwveh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Phvul.002G137000.1 465 SRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 509
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1975142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2177146IPR009057Homeodomain-like
PROSITE profilePS5007116.92581141IPR001356Homeobox domain
SMARTSM003898.8E-1982145IPR001356Homeobox domain
CDDcd000863.15E-1884142No hitNo description
PfamPF000467.2E-1884139IPR001356Homeobox domain
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PROSITE profilePS5084843.25275512IPR002913START domain
SuperFamilySSF559611.1E-31276511No hitNo description
CDDcd088753.70E-113279508No hitNo description
SMARTSM002342.5E-33284509IPR002913START domain
PfamPF018521.1E-40285509IPR002913START domain
SuperFamilySSF559614.67E-19527765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNSD TLFSSSIQNS NFNFIPTMPF QPFPSMKEED GMLRGKEEME  60
SGSGSEQVED KSGNEQESEQ PTKKKRYHRH TARQIQEMEA LFKECPHPDD KQRLKLSHEL  120
GLKPRQVKFW FQNRRTQMKA QQDRADNIIL RAENETLKSE NYRLQAALRN VMCPNCGGQC  180
IMGADLGLDE HQVRIENARL REELERVCCL TSRYTGRSLQ TMAAGPTLMA PSLDLDMNMY  240
PRHFSDSVAP CTEMIPVPML PPEASPFSEG GGVLMEEEKS LALELAASSM AELVKMCQTN  300
EPLWIRSSEG EREVLNFEEH ARIFPWPQNL KHRSELRTEA SRDTSVVIMN SVTLVDAFLD  360
GQKWMELFPT IVSRAKTVQI ISSGASGHAS GTLQLMSAEF QVLSPLVSTR ETHFLRYCQQ  420
NAEEGTWAIV DFPVDSFHQN FHPSYPRYCR RSSGCVIQDM PNGYSRVTWV EHAKVEEKPV  480
HQIFSNYVYS GMAFGAQRWL GVLQRQCERV ASLMARNISD LGVIPSPEAR KNLMKLAQRM  540
IKTFGLNMST SGGQSWTAIS DSPEDTVRIT TRKVTEPGQP NGVILSAVST TWLPYSHTKV  600
FDLLRDERHR SQMDALSNGN SLNEVAHIAN GSHPGNCISL LRINVASNSS QNVELMLQES  660
CTDQSGSLVV YTTIDVDSIQ LAMSGEDPSC IALLPQGFTI VPMLSSPNVD TPINANSSEP  720
PSLNSGCLLT MGLQVLASTI PSAKLNLSSV TAINNHLCNT LHQIEAALSN GNENGTNFLC  780
TEPTASAPPK R*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G137000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158253.10.0hypothetical protein PHAVU_002G137000g
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLV7CJ980.0V7CJ98_PHAVU; Uncharacterized protein
STRINGXP_007158253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7