PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G110500.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 551aa    MW: 59070.3 Da    PI: 5.5803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G110500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09366414355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Phvul.002G110500.1 366 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 414
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-17361431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-11361418No hitNo description
PROSITE profilePS5088815.485363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16364431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6366414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSDKEKFEVD RSEDPMGYSS GMHSDWRFGG ANLANSSAGL VAMGNSMNAS RGDLIGSSSC  60
SSASMVDSFG PSYWDNSTGS QNMGFCDFNV HNNGGSSNTA GIRKDGFGFG RVGQDHPGTL  120
DMAWNPANSM LPNGPGMFPH SLSQFPTDSG FIERAARFSC FSGGNFTDMV NSYGIAQSTG  180
VYGARDAIAG HGLKSVTGGQ SQGGDMNVVE ATKDLSPSVE HLASKGSPLK SDKRSEGHTM  240
SHDDRKLTLV RPANESDRAE SSDDDGGGQD DSPILEGASE EPSFKGLNSK KRKRSGQDAD  300
NDIGNGAPEI PNEATKDNSE NQQKVDHQPT PATKSSGKNA KLGSQASDPP KEEYIHVRAR  360
RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL  420
SMKLATVNPR LEFNIEGLLG KDILQHRPGP SSGIGFPLDI SMAFPPIHPS QPGLIHPIIP  480
NMVNSADILQ RNIHQQLAPL NSGFKEPNQL SDVWEDELHN VVQMSFATTA PLSNQDVDGT  540
VSASQMKVEL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G110500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913675.10.0transcription factor bHLH49
RefseqXP_027913676.10.0transcription factor bHLH49
RefseqXP_027913677.10.0transcription factor bHLH49
RefseqXP_027913678.10.0transcription factor bHLH49
RefseqXP_027913679.10.0transcription factor bHLH49
RefseqXP_027913680.10.0transcription factor bHLH49
RefseqXP_027913681.10.0transcription factor bHLH49
RefseqXP_027913683.10.0transcription factor bHLH49
TrEMBLA0A0L9UU550.0A0A0L9UU55_PHAAN; Uncharacterized protein
STRINGGLYMA01G09400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-105bHLH family protein