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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.002G109400.1 |
| Common Name | PHAVU_002G109400g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
WOX |
| Protein Properties |
Length: 288aa MW: 32175 Da PI: 4.8851 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.002G109400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.1 | 8.2e-20 | 28 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++
Phvul.002G109400.1 28 STRWTPTTDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89
58*****************8567*************************************97 PP
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| 2 | Wus_type_Homeobox | 113.6 | 9.8e-37 | 27 | 91 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
Phvul.002G109400.1 27 SSTRWTPTTDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91
789***************9779*****************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MEPQQPQGSQ PNEDGGSGKG GFLSRQSSTR WTPTTDQIRI LKDLYYNNGI RSPSAEQIQR 60
ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTSDNVPM QRPAPTNAAP PWKPDQDPIH 120
TKYSNISSTG ISSASSSSVE MITVGQMGNY GYGSVPMEKS FRDCSISAGG SSGHVGINHN 180
LGWVGVDPYS SAYANFFDKI RPNEETLEEE EEEEEEEEEE DGGAEIETLP LFPMHGEDIH 240
GYCNLKSNSY NYDGNGWYHS EDGFKNGSRA SLELSLNSYT RRSPDFA*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 1e-176 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
