PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G101200.1
Common NamePHAVU_002G101200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 668aa    MW: 77703.3 Da    PI: 7.0208
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G101200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1712.8e-2257141190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn +Ake GF +r+s+s  +++++e +++++ Cs  g++++++ +     ++r+etrtgC a++++++ ++ +w++ +++l+HnH+++
  Phvul.002G101200.1  57 NFYNIHAKEQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRMVESRRWRIVEVVLQHNHQVS 141
                         6*****************************************99888.....9**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2057142IPR004330FAR1 DNA binding domain
PfamPF105512.3E-23263355IPR018289MULE transposase domain
PROSITE profilePS509668.827549585IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-4560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MEEVCLNSEP FFDESDDADV EGSSVAEHGL ESLNSQPKNP PVPTVGLEFD SFEEVYNFYN  60
IHAKEQGFGI RVSNSWFRSK KKERYRAKLS CSSAGFKKKS EANNPRPETR TGCPAMIVIR  120
MVESRRWRIV EVVLQHNHQV SPQSKQFYKS HKKMILEASK SQPPPEPVTE VHTIKLYRTT  180
VMDVDYNGYS NSDESRDTNF DKFKCLELRE GDASAIYNYF CRMKLTDPNF FYLFDIDDDG  240
HLKNVFWADS RSRIAHNYFN DTVTIDTTCL ANKYEIPLIS FVGVNHHGHS ILLGCGFLGH  300
ESVDYFVWIF KAWLKCMLGR PPHVVITDQC KTLQIAVAQV FPHARHCYSL QYIMQRVPEK  360
LGGLQGYEAI RRQMYNAVYH SLKIVEFESS WTDMIKCHGL GDNKWIQTLY KDRHLWVPVY  420
LKDVFFVGLI STKENEGLTA FFDGYVHKHT SFKEFLDKYD LALHRKHLKE AMADLETRKE  480
SFEFKTRCNF EAQLSKVYTE EIFKKFQTEV EGMYSCFNTR QVNVNGSIIT YIVKERVEVE  540
GNEKGVKSFE VLYETTKLDI RCICSLLNYK GYLCRHALNV LNYNGVEEIP SRYILRRWTR  600
DFKQTFNQLH ASSNINTYHP VHLYTHLFNS ALPVLEVGAQ SQEHYMVAVK ELQELLDKFD  660
IEDNNSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G101200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157824.10.0hypothetical protein PHAVU_002G101200g
TrEMBLV7CKD60.0V7CKD6_PHAVU; Uncharacterized protein
STRINGXP_007157824.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6