PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G095800.1
Common NamePHAVU_002G095800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 306aa    MW: 34426.3 Da    PI: 7.0964
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G095800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2172132257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++R+++t+ ql +Leel+++ +++psae+++++A++l    +++ ++V++WFqN++a+e++
  Phvul.002G095800.1  72 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 132
                         68*****************99**************************************97 PP
2Wus_type_Homeobox112.32.5e-3671134265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
  Phvul.002G095800.1  71 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 134
                         789***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-1366136IPR009057Homeodomain-like
PROSITE profilePS5007112.34168133IPR001356Homeobox domain
SMARTSM003895.9E-770137IPR001356Homeobox domain
PfamPF000463.5E-1973132IPR001356Homeobox domain
CDDcd000867.98E-673128No hitNo description
Gene3DG3DSA:1.10.10.601.1E-973132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSDSFASTFH SSTANITHNS HATPKITTLC SIAQPYCICT HCNHILAFNQ HVGNVAEEGT  60
NNTGSHVQSQ QSTRWSPTPV QLLVLEELYR QGTKTPSAEQ IQQIASQLRQ FGKIEGKNVF  120
YWFQNHKARE RQKRRRREME ENNAASSSEG LKETGCGVKE TKKWASTSNC SRHAEESAAL  180
DIAEKGSHGC TQFEERGIQV LRRNIAERKL QLQDNMEMPC FPPTTMAALA TSHRTLNAQL  240
SYNRESLNCY DGENADPRTL DLFPHKRDDQ DDICLAERKS MFCASASMDA DITSSQYFEF  300
LPLRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G095800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-148AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157754.10.0hypothetical protein PHAVU_002G095800g
TrEMBLV7CK760.0V7CK76_PHAVU; Uncharacterized protein
STRINGXP_007157754.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.14e-29WOX family protein