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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G094100.1 |
Common Name | PHAVU_002G094100g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
HD-ZIP |
Protein Properties |
Length: 213aa MW: 23864.2 Da PI: 8.2127 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G094100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 64 | 118 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k
Phvul.002G094100.1 64 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSK 118
78889************************************************98 PP
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2 | HD-ZIP_I/II | 118.7 | 3.2e-38 | 64 | 152 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
Phvul.002G094100.1 64 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 152
69*************************************************************************************94 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MAVLPSTSST LELTISIPGF ASSPTLLPSS SVKELDINQV PLEEDWMASN MEDEEDSSNG 60 DPPRKKLRLT KEQSRLLEES FRQNHTLNPK QKESLAMQLK LRPRQVEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLTEQN RRLQREVEEL RAMKVGPPTV ISPHFCEPRP ASTLTMCPSC 180 ERVTTTADKP PSAAATLSAK VPAQSPQPSA AC*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 112 | 120 | RRARSKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 1e-123 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |