PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G091100.2
Common NamePHAVU_002G091100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 363aa    MW: 40404.7 Da    PI: 9.1889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G091100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-3290146259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg+nWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ i+Y+geHnh+
  Phvul.002G091100.2  90 DDGHNWRKYGQKQVKGSEFPRSYYKCTHPHCPVKKKVERSL-EGHVTAIIYKGEHNHQ 146
                         8****************************************.***************8 PP
2WRKY107.37.5e-34250308159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.002G091100.2 250 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHD 308
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-2975148IPR003657WRKY domain
SuperFamilySSF1182902.62E-2587148IPR003657WRKY domain
SMARTSM007741.0E-3489147IPR003657WRKY domain
PfamPF031069.5E-2590146IPR003657WRKY domain
PROSITE profilePS5081122.50490148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37235310IPR003657WRKY domain
SuperFamilySSF1182906.93E-30242310IPR003657WRKY domain
PROSITE profilePS5081138.675245310IPR003657WRKY domain
SMARTSM007742.9E-39250309IPR003657WRKY domain
PfamPF031062.0E-26251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTHQQAIAQV SVQASQANSN MNIHPEHSMS VSVSSPTSFT QVPAATSNTK QQLIPPLTAD  60
SRATMTEFAH HSHSEQKLQS SSLNVDKPAD DGHNWRKYGQ KQVKGSEFPR SYYKCTHPHC  120
PVKKKVERSL EGHVTAIIYK GEHNHQRPLP NKRSKDALTS NENSNMQWNA SAYQGTTKMD  180
PESSQATADH LSGSDSEEVG DHEAEEDEKN VEPHPKRSKT EVTNLDPTFS HRTVTEPRII  240
VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG CKVRKHVERA STDPKAVITT  300
YEGKHNHDVP AAKTSSHVMA GNTSQIKPQN SNPGKHSFGT RDIGGNEQQP VARLRLKEEK  360
IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-4590311878Probable WRKY transcription factor 4
2lex_A7e-4590311878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G091100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157703.10.0hypothetical protein PHAVU_002G091100g
SwissprotQ9ZQ701e-127WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV7CHN80.0V7CHN8_PHAVU; Uncharacterized protein
STRINGXP_007157702.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-114WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]