PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G089800.1 | ||||||||
Common Name | PHAVU_002G089800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Whirly | ||||||||
Protein Properties | Length: 259aa MW: 29044.4 Da PI: 10.0862 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 122.4 | 2.8e-38 | 76 | 219 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 svy +k+ l++ ++ p fe+ +sg++ ++r+G +ll++a+++++ + ydW++kq+f+ls+ e++++++l+ k+s ef +a+ +sn + Phvul.002G089800.1 76 SVYTSKGVLTLAPKPPGFESKASGAFGVSREGYMLLQFAPSVGTEEsiYDWNQKQVFSLSVSEMGTVISLGEKDSWEFSRKSAKPNSNGIE 166 79***************************************9865444******************************************* PP Whirly 90 vrkalkvePlpdGsGlfvnlsvtns...lvkgnesfsvPvskaefavlrsllv 139 vrk+lkvePl d +G+ ++lsv ++ + + +e++++Pv++a avlrs+++ Phvul.002G089800.1 167 VRKVLKVEPLVDATGHSFSLSVYKKpatMEEIEENIYLPVTRAHLAVLRSIFN 219 **********************9873225677899****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.3E-53 | 66 | 239 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 7.85E-44 | 70 | 255 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.1E-41 | 77 | 217 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSRVLRSLLT LKHLSLPFRS FVPPKFIVPL NRNFSFIFPT SLSVRCNHSN LVEPFPPLPQ 60 NPPVTKFPLR VYADYSVYTS KGVLTLAPKP PGFESKASGA FGVSREGYML LQFAPSVGTE 120 ESIYDWNQKQ VFSLSVSEMG TVISLGEKDS WEFSRKSAKP NSNGIEVRKV LKVEPLVDAT 180 GHSFSLSVYK KPATMEEIEE NIYLPVTRAH LAVLRSIFNY IMPYLLGWNA FASTVKPEVY 240 SQVNSANPRY SANNERKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G089800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-48 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015044 | 1e-48 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157686.1 | 0.0 | hypothetical protein PHAVU_002G089800g | ||||
Swissprot | Q9M9S3 | 2e-62 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | V7CK82 | 0.0 | V7CK82_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157686.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-64 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G089800.1 |
Entrez Gene | 18637398 |