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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.002G089800.1 |
| Common Name | PHAVU_002G089800g |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
Whirly |
| Protein Properties |
Length: 259aa MW: 29044.4 Da PI: 10.0862 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.002G089800.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 122.4 | 2.8e-38 | 76 | 219 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89
svy +k+ l++ ++ p fe+ +sg++ ++r+G +ll++a+++++ + ydW++kq+f+ls+ e++++++l+ k+s ef +a+ +sn +
Phvul.002G089800.1 76 SVYTSKGVLTLAPKPPGFESKASGAFGVSREGYMLLQFAPSVGTEEsiYDWNQKQVFSLSVSEMGTVISLGEKDSWEFSRKSAKPNSNGIE 166
79***************************************9865444******************************************* PP
Whirly 90 vrkalkvePlpdGsGlfvnlsvtns...lvkgnesfsvPvskaefavlrsllv 139
vrk+lkvePl d +G+ ++lsv ++ + + +e++++Pv++a avlrs+++
Phvul.002G089800.1 167 VRKVLKVEPLVDATGHSFSLSVYKKpatMEEIEENIYLPVTRAHLAVLRSIFN 219
**********************9873225677899****************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MSRVLRSLLT LKHLSLPFRS FVPPKFIVPL NRNFSFIFPT SLSVRCNHSN LVEPFPPLPQ 60
NPPVTKFPLR VYADYSVYTS KGVLTLAPKP PGFESKASGA FGVSREGYML LQFAPSVGTE 120
ESIYDWNQKQ VFSLSVSEMG TVISLGEKDS WEFSRKSAKP NSNGIEVRKV LKVEPLVDAT 180
GHSFSLSVYK KPATMEEIEE NIYLPVTRAH LAVLRSIFNY IMPYLLGWNA FASTVKPEVY 240
SQVNSANPRY SANNERKR*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 5e-59 | 70 | 255 | 37 | 217 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 1e-48 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
| GenBank | AP015044 | 1e-48 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Carella P,Wilson DC,Cameron RK
Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
Front Plant Sci, 2014. 5: p. 775
[PMID:25620972] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Guan Z,Wang W,Yu X,Lin W,Miao Y
Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:30065159]
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