PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G086600.1
Common NamePHAVU_002G086600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 421aa    MW: 44213.9 Da    PI: 7.4081
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G086600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.95.9e-41701942128
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s++   
  Phvul.002G086600.1  70 PPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSTMSAPshy 160
                         789******************************************************************9997777777777755555444 PP

                 TCP  89 ...............kaaksaakskksqksaasalnlakesrakarararertre 128
                                        +                     a+   a+ r ra+   + 
  Phvul.002G086600.1 161 frgnyfnpstfststA---------------------AAAAAAQLRNRAEWDRNM 194
                         5444444444433322.....................222223333333222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3974210IPR005333Transcription factor, TCP
PROSITE profilePS5136927.26576130IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MELEPDHHQN GIRTRPNFPL QLLEKKDLDD VTEQPCSTTT RDTVLTATTI TTTSATNNNL  60
HLADQSKKPP PKRTSTKDRH TKVDGRGRRI RMPAACAARV FQLTRELGHK SDGETIEWLL  120
QQAEPSVIAA TGTGTIPANF TSLNISLRSS GSTMSAPSHY FRGNYFNPST FSTSTAAAAA  180
AAQLRNRAEW DRNMSMVMED SRRSMLENTS SISAILNFNP MGNINVIQQA KQELREESGG  240
GLELVATDSD GSLGRKRRPE QELSQMGSYL IQSSTGSLPA SHASNTAAFW MVAGHGNQSM  300
SGGGGGGGGS NGNDNPIWAI PSVGNSGVYR GAMSPPGGIH FMNFASPMPL MPGGQLGSGM  360
VGSGGGGSGS AQLLSESNLG MLAALNAYRQ IPANGVSESP GSAGQPHGGD DGRDSTSQHS  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G086600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157639.10.0hypothetical protein PHAVU_002G086600g
TrEMBLV7CJV70.0V7CJV7_PHAVU; Uncharacterized protein
STRINGXP_007157639.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.14e-47TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14