PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G083800.1
Common NamePHAVU_002G083800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 463aa    MW: 51097.3 Da    PI: 6.5557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G083800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-16139184147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Phvul.002G083800.1 139 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184
                         899*****************************.***********996 PP
2Myb_DNA-binding55.41.4e-17191234146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Phvul.002G083800.1 191 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17134185IPR017930Myb domain
SMARTSM007172.9E-14138187IPR001005SANT/Myb domain
PfamPF002499.8E-16139184IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-28139232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-25140192IPR009057Homeodomain-like
CDDcd001673.76E-13142183No hitNo description
PROSITE profilePS5129426.929186240IPR017930Myb domain
SMARTSM007171.8E-14190238IPR001005SANT/Myb domain
PfamPF002492.8E-14191233IPR001005SANT/Myb domain
CDDcd001671.13E-11193233No hitNo description
Gene3DG3DSA:1.10.10.601.7E-20193239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MASSKCCMIS SQQNQNAPTC CPFPSPPSMG MVYADMMGSL SLSTVSNALS SQESYGYGHS  60
HDHGQASGVE NGRSTSWTFP FMREFLSSNF EDCSDVGAGE SNSNDKTTNN GKFSEESNPN  120
ENPLSGKEVD SGHSKLCARG HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR  180
WFNQLDPRIN RRAFSEEEEE RLMQAHRIYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY  240
REQSSAYRRR RMSQSVYKRV EQNPTFLCSR DNASTAEQDP TPSYCLHLLH NDVGITNNVF  300
SFPSFHGVGA GEIVEFGSNG SPQNMTGGSE TMSNTPQLGL CAQPQQAPFD FFSGGGSKDT  360
MGEANGQIRS WERTNESLHH HCQQSGSYPH YPQQYLMAMQ QLDNNSCNNF YSFLNSSSAS  420
TTTGNEPSSS PCVAGIRDKV VNSDPPDGVP PPFFDFLGVG AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-341392397107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G083800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157609.10.0hypothetical protein PHAVU_002G083800g
TrEMBLV7CJS20.0V7CJS2_PHAVU; Uncharacterized protein
STRINGXP_007157609.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-77myb domain protein 105